rzy@rzy-Precision-7920-Tower:~/rzy/softwares/petsc-3.20.5$ make all check ========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems. Please check the mailing list archives and consider subscribing. https://petsc.org/release/community/mailing/ ========================================== Starting make run on rzy-Precision-7920-Tower at Mon, 05 Aug 2024 23:19:25 -0400 Machine characteristics: Linux rzy-Precision-7920-Tower 5.15.0-107-generic #117~20.04.1-Ubuntu SMP Tue Apr 30 10:35:57 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux ----------------------------------------- Using PETSc directory: /home/rzy/rzy/softwares/petsc-3.20.5 Using PETSc arch: arch-darwin-c-opt ----------------------------------------- PETSC_VERSION_RELEASE 1 PETSC_VERSION_MAJOR 3 PETSC_VERSION_MINOR 20 PETSC_VERSION_SUBMINOR 5 PETSC_VERSION_DATE "Feb 27, 2024" PETSC_VERSION_GIT "v3.20.5" PETSC_VERSION_DATE_GIT "2024-02-27 08:38:29 +0530" ----------------------------------------- Using configure Options: --with-cc=gcc --with-cc=gcc -with-cxx=g++ --with-fc=gfortran --download-mpich --download-fblaslapack Using configuration flags: #define PETSC_ARCH "arch-darwin-c-opt" #define PETSC_ATTRIBUTEALIGNED(size) __attribute((aligned(size))) #define PETSC_BLASLAPACK_UNDERSCORE 1 #define PETSC_CLANGUAGE_C 1 #define PETSC_CXX_RESTRICT __restrict #define PETSC_DEPRECATED_ENUM_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_FUNCTION_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_MACRO_BASE(string_literal_why) PETSC_DEPRECATED_MACRO_BASE_(GCC warning string_literal_why) #define PETSC_DEPRECATED_MACRO_BASE_(why) _Pragma(#why) #define PETSC_DEPRECATED_OBJECT_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DEPRECATED_TYPEDEF_BASE(string_literal_why) __attribute__((deprecated(string_literal_why))) #define PETSC_DIR "/home/rzy/rzy/softwares/petsc-3.20.5" #define PETSC_DIR_SEPARATOR '/' #define PETSC_FORTRAN_CHARLEN_T size_t #define PETSC_FORTRAN_TYPE_INITIALIZE = -2 #define PETSC_FUNCTION_NAME_C __func__ #define PETSC_FUNCTION_NAME_CXX __func__ #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_ATOLL 1 #define PETSC_HAVE_ATTRIBUTEALIGNED 1 #define PETSC_HAVE_BUILTIN_EXPECT 1 #define PETSC_HAVE_BZERO 1 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_CXX 1 #define PETSC_HAVE_CXX_ATOMIC 1 #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_HAVE_CXX_COMPLEX_FIX 1 #define PETSC_HAVE_CXX_DIALECT_CXX11 1 #define PETSC_HAVE_CXX_DIALECT_CXX14 1 #define PETSC_HAVE_CXX_DIALECT_CXX17 1 #define PETSC_HAVE_DLADDR 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_ERF 1 #define PETSC_HAVE_EXECUTABLE_EXPORT 1 #define PETSC_HAVE_FBLASLAPACK 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_FENV_H 1 #define PETSC_HAVE_FE_VALUES 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_FORTRAN_FLUSH 1 #define PETSC_HAVE_FORTRAN_FREE_LINE_LENGTH_NONE 1 #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #define PETSC_HAVE_FORTRAN_TYPE_STAR 1 #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_IMMINTRIN_H 1 #define PETSC_HAVE_INTTYPES_H 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_HAVE_LGAMMA 1 #define PETSC_HAVE_LINUX 1 #define PETSC_HAVE_LOG2 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_MMAP 1 #define PETSC_HAVE_MPICH 1 #define PETSC_HAVE_MPICH_NUMVERSION 40102300 #define PETSC_HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE MPIR_CVAR_CH3 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPI_COMBINER_NAMED 1 #define PETSC_HAVE_MPI_F90MODULE 1 #define PETSC_HAVE_MPI_F90MODULE_VISIBILITY 1 #define PETSC_HAVE_MPI_FEATURE_DYNAMIC_WINDOW 1 #define PETSC_HAVE_MPI_GET_ACCUMULATE 1 #define PETSC_HAVE_MPI_GET_LIBRARY_VERSION 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_LARGE_COUNT 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_NEIGHBORHOOD_COLLECTIVES 1 #define PETSC_HAVE_MPI_NONBLOCKING_COLLECTIVES 1 #define PETSC_HAVE_MPI_ONE_SIDED 1 #define PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY 1 #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #define PETSC_HAVE_MPI_RGET 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_PACKAGES ":blaslapack:fblaslapack:mathlib:mpi:mpich:pthread:regex:x11:" #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_POSIX_MEMALIGN 1 #define PETSC_HAVE_PTHREAD 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_REAL___FLOAT128 1 #define PETSC_HAVE_REGEX 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SO_REUSEADDR 1 #define PETSC_HAVE_STDATOMIC_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_STRUCT_SIGACTION 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_TAU_PERFSTUBS 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_X 1 #define PETSC_HAVE_XMMINTRIN_H 1 #define PETSC_INTPTR_T intptr_t #define PETSC_INTPTR_T_FMT "#" PRIxPTR #define PETSC_IS_COLORING_MAX USHRT_MAX #define PETSC_IS_COLORING_VALUE_TYPE short #define PETSC_IS_COLORING_VALUE_TYPE_F integer2 #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #define PETSC_LIB_DIR "/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib" #define PETSC_MAX_PATH_LEN 4096 #define PETSC_MEMALIGN 16 #define PETSC_MPICC_SHOW "gcc -fPIC -Wno-lto-type-mismatch -g -O0 -I/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/include -L/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -Wl,-rpath -Wl,/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -Wl,--enable-new-dtags -lmpi" #define PETSC_MPIU_IS_COLORING_VALUE_TYPE MPI_UNSIGNED_SHORT #define PETSC_OMAKE "/usr/bin/make --no-print-directory" #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #define PETSC_PYTHON_EXE "/usr/bin/python3" #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #define PETSC_REPLACE_DIR_SEPARATOR '\\' #define PETSC_SIGNAL_CAST #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_SLSUFFIX "so" #define PETSC_UINTPTR_T uintptr_t #define PETSC_UINTPTR_T_FMT "#" PRIxPTR #define PETSC_UNUSED __attribute((unused)) #define PETSC_USE_AVX512_KERNELS 1 #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_CTABLE 1 #define PETSC_USE_DEBUG 1 #define PETSC_USE_DEBUGGER "gdb" #define PETSC_USE_DMLANDAU_2D 1 #define PETSC_USE_FORTRAN_BINDINGS 1 #define PETSC_USE_INFO 1 #define PETSC_USE_ISATTY 1 #define PETSC_USE_LOG 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_USE_SHARED_LIBRARIES 1 #define PETSC_USE_SINGLE_LIBRARY 1 #define PETSC_USE_SOCKET_VIEWER 1 #define PETSC_USE_VISIBILITY_C 1 #define PETSC_USE_VISIBILITY_CXX 1 #define PETSC_USING_64BIT_PTR 1 #define PETSC_USING_F2003 1 #define PETSC_USING_F90FREEFORM 1 #define PETSC__BSD_SOURCE 1 #define PETSC__DEFAULT_SOURCE 1 #define PETSC__GNU_SOURCE 1 ----------------------------------------- Using C compile: /home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/bin/mpicc -o .o -c -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 mpicc -show: gcc -fPIC -Wno-lto-type-mismatch -g -O0 -I/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/include -L/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -Wl,-rpath -Wl,/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -Wl,--enable-new-dtags -lmpi C compiler version: gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 Using C++ compile: /home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/bin/mpicxx -o .o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O0 -std=gnu++17 -I/home/rzy/rzy/softwares/petsc-3.20.5/include -I/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/include mpicxx -show: g++ -Wno-lto-type-mismatch -Wno-psabi -g -O0 -std=gnu++17 -fPIC -I/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/include -L/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -lmpicxx -Wl,-rpath -Wl,/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -Wl,--enable-new-dtags -lmpi C++ compiler version: g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 Using Fortran compile: /home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/bin/mpif90 -o .o -c -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 -I/home/rzy/rzy/softwares/petsc-3.20.5/include -I/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/include mpif90 -show: gfortran -fPIC -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -g -O0 -I/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/include -I/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/include -L/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -lmpifort -Wl,-rpath -Wl,/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -Wl,--enable-new-dtags -lmpi Fortran compiler version: GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 ----------------------------------------- Using C/C++ linker: /home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/bin/mpicc Using C/C++ flags: -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -fstack-protector -fvisibility=hidden -g3 -O0 Using Fortran linker: /home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/bin/mpif90 Using Fortran flags: -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -g -O0 ----------------------------------------- Using system modules: Using mpi.h: # 1 "/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/include/mpi.h" 1 ----------------------------------------- Using libraries: -Wl,-rpath,/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -L/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -Wl,-rpath,/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -L/home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9 -lpetsc -lflapack -lfblas -lpthread -lm -lX11 -ldl -lmpifort -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -lstdc++ -ldl ------------------------------------------ Using mpiexec: /home/rzy/rzy/softwares/petsc-3.20.5/arch-darwin-c-opt/bin/mpiexec ------------------------------------------ Using MAKE: /usr/bin/make Default MAKEFLAGS: MAKE_NP:49 MAKE_LOAD:131.2 MAKEFLAGS: --no-print-directory -- PETSC_ARCH=arch-darwin-c-opt PETSC_DIR=/home/rzy/rzy/softwares/petsc-3.20.5 ========================================== /usr/bin/make --print-directory -f gmakefile -j49 -l131.2 --output-sync=recurse V= libs make[3]: Nothing to be done for 'libs'. ========================================= Now to check if the libraries are working do: make PETSC_DIR=/home/rzy/rzy/softwares/petsc-3.20.5 PETSC_ARCH=arch-darwin-c-opt check ========================================= Running PETSc check examples to verify correct installation Using PETSC_DIR=/home/rzy/rzy/softwares/petsc-3.20.5 and PETSC_ARCH=arch-darwin-c-opt Possible error running C/C++ src/snes/tutorials/ex19 with 1 MPI process See https://petsc.org/release/faq/ hwloc/linux: Ignoring PCI device with non-16bit domain. Pass --enable-32bits-pci-domain to configure to support such devices (warning: it would break the library ABI, don't enable unless really needed). lid velocity = 0.0016, prandtl # = 1., grashof # = 1. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Petsc has generated inconsistent data [0]PETSC ERROR: PCMPI object prefix does not have mpi_linear_solver_server_ [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-mpi_ksp_max_it value: 200 source: file [0]PETSC ERROR: Option left: name:-mpi_ksp_reuse_preconditioner (no value) source: file [0]PETSC ERROR: Option left: name:-mpi_ksp_rtol value: 1.e-9 source: file [0]PETSC ERROR: Option left: name:-mpi_ksp_type value: gmres source: file [0]PETSC ERROR: Option left: name:-mpi_linear_solver_server_view (no value) source: file [0]PETSC ERROR: Option left: name:-mpi_pc_gamg_sym_graph value: true source: file [0]PETSC ERROR: Option left: name:-mpi_pc_gamg_symmetrize_graph value: true source: file [0]PETSC ERROR: Option left: name:-mpi_pc_type value: gamg source: file [0]PETSC ERROR: Option left: name:-pc_mpi_minimum_count_per_rank value: 5000 source: file [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.20.5, Feb 27, 2024 [0]PETSC ERROR: ./ex19 on a arch-darwin-c-opt named rzy-Precision-7920-Tower by rzy Mon Aug 5 23:19:27 2024 [0]PETSC ERROR: Configure options --with-cc=gcc --with-cc=gcc -with-cxx=g++ --with-fc=gfortran --download-mpich --download-fblaslapack [0]PETSC ERROR: #1 PCCreate_MPI() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mpi/pcmpi.c:763 [0]PETSC ERROR: #2 PCSetType() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/interface/pcset.c:75 [0]PETSC ERROR: #3 KSPCheckPCMPI() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:2138 [0]PETSC ERROR: #4 KSPGetPC() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:2170 [0]PETSC ERROR: #5 KSPSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:327 [0]PETSC ERROR: #6 KSPSolve_Private() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:832 [0]PETSC ERROR: #7 KSPSolve() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:1079 [0]PETSC ERROR: #8 KSPSetUp_Chebyshev() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/impls/cheby/cheby.c:822 [0]PETSC ERROR: #9 KSPSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:377 [0]PETSC ERROR: #10 PCSetUp_MG() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mg/mg.c:1186 [0]PETSC ERROR: #11 PCSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/interface/precon.c:1080 [0]PETSC ERROR: #12 KSPSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:415 [0]PETSC ERROR: #13 PCSetUp_Seq() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mpi/pcmpi.c:574 [0]PETSC ERROR: #14 PCSetUp_MPI() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mpi/pcmpi.c:646 [0]PETSC ERROR: #15 PCSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/interface/precon.c:1080 [0]PETSC ERROR: #16 KSPSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:415 [0]PETSC ERROR: #17 KSPSolve_Private() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:832 [0]PETSC ERROR: #18 KSPSolve() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:1079 [0]PETSC ERROR: #19 SNESSolve_NEWTONLS() at /home/rzy/rzy/softwares/petsc-3.20.5/src/snes/impls/ls/ls.c:215 [0]PETSC ERROR: #20 SNESSolve() at /home/rzy/rzy/softwares/petsc-3.20.5/src/snes/interface/snes.c:4659 [0]PETSC ERROR: #21 main() at ex19.c:152 [0]PETSC ERROR: PETSc Option Table entries: [0]PETSC ERROR: -checkfunctionlist (source: environment) [0]PETSC ERROR: -da_refine 3 (source: command line) [0]PETSC ERROR: -ksp_type fgmres (source: command line) [0]PETSC ERROR: -mpi_ksp_max_it 200 (source: file) [0]PETSC ERROR: -mpi_ksp_reuse_preconditioner (source: file) [0]PETSC ERROR: -mpi_ksp_rtol 1.e-9 (source: file) [0]PETSC ERROR: -mpi_ksp_type gmres (source: file) [0]PETSC ERROR: -mpi_linear_solver_server (source: file) [0]PETSC ERROR: -mpi_linear_solver_server_view (source: file) [0]PETSC ERROR: -mpi_pc_gamg_sym_graph true (source: file) [0]PETSC ERROR: -mpi_pc_gamg_symmetrize_graph true (source: file) [0]PETSC ERROR: -mpi_pc_type gamg (source: file) [0]PETSC ERROR: -pc_mpi_minimum_count_per_rank 5000 (source: file) [0]PETSC ERROR: -pc_type mg (source: command line) [0]PETSC ERROR: -use_gpu_aware_mpi 0 (source: environment) [0]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_SELF, 77) - process 0 Possible error running C/C++ src/snes/tutorials/ex19 with 2 MPI processes See https://petsc.org/release/faq/ hwloc/linux: Ignoring PCI device with non-16bit domain. Pass --enable-32bits-pci-domain to configure to support such devices (warning: it would break the library ABI, don't enable unless really needed). lid velocity = 0.0016, prandtl # = 1., grashof # = 1. [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Petsc has generated inconsistent data [0]PETSC ERROR: PCMPI object prefix does not have mpi_linear_solver_server_ [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-mpi_ksp_max_it value: 200 source: file [0]PETSC ERROR: Option left: name:-mpi_ksp_reuse_preconditioner (no value) source: file [0]PETSC ERROR: Option left: name:-mpi_ksp_rtol value: 1.e-9 source: file [0]PETSC ERROR: Option left: name:-mpi_ksp_type value: gmres source: file [0]PETSC ERROR: Option left: name:-mpi_linear_solver_server_view (no value) source: file [0]PETSC ERROR: Option left: name:-mpi_pc_gamg_sym_graph value: true source: file [0]PETSC ERROR: Option left: name:-mpi_pc_gamg_symmetrize_graph value: true source: file [0]PETSC ERROR: Option left: name:-mpi_pc_type value: gamg source: file [0]PETSC ERROR: Option left: name:-pc_mpi_minimum_count_per_rank value: 5000 source: file [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.20.5, Feb 27, 2024 [0]PETSC ERROR: ./ex19 on a arch-darwin-c-opt named rzy-Precision-7920-Tower by rzy Mon Aug 5 23:19:27 2024 [0]PETSC ERROR: Configure options --with-cc=gcc --with-cc=gcc -with-cxx=g++ --with-fc=gfortran --download-mpich --download-fblaslapack [0]PETSC ERROR: #1 PCCreate_MPI() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mpi/pcmpi.c:763 [0]PETSC ERROR: #2 PCSetType() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/interface/pcset.c:75 [0]PETSC ERROR: #3 KSPCheckPCMPI() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:2138 [0]PETSC ERROR: #4 KSPGetPC() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:2170 [0]PETSC ERROR: #5 KSPSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:327 [0]PETSC ERROR: #6 KSPSolve_Private() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:832 [0]PETSC ERROR: #7 KSPSolve() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:1079 [0]PETSC ERROR: #8 KSPSetUp_Chebyshev() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/impls/cheby/cheby.c:822 [0]PETSC ERROR: #9 KSPSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:377 [0]PETSC ERROR: #10 PCSetUp_MG() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mg/mg.c:1186 [0]PETSC ERROR: #11 PCSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/interface/precon.c:1080 [0]PETSC ERROR: #12 KSPSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:415 [0]PETSC ERROR: #13 PCSetUp_Seq() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mpi/pcmpi.c:574 [0]PETSC ERROR: #14 PCSetUp_MPI() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mpi/pcmpi.c:646 [0]PETSC ERROR: #15 PCSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/interface/precon.c:1080 [0]PETSC ERROR: #16 KSPSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:415 [0]PETSC ERROR: #17 KSPSolve_Private() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:832 [0]PETSC ERROR: #18 KSPSolve() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:1079 [0]PETSC ERROR: #19 SNESSolve_NEWTONLS() at /home/rzy/rzy/softwares/petsc-3.20.5/src/snes/impls/ls/ls.c:215 [0]PETSC ERROR: #20 SNESSolve() at /home/rzy/rzy/softwares/petsc-3.20.5/src/snes/interface/snes.c:4659 [0]PETSC ERROR: #21 main() at ex19.c:152 [0]PETSC ERROR: PETSc Option Table entries: [0]PETSC ERROR: -checkfunctionlist (source: environment) [0]PETSC ERROR: -da_refine 3 (source: command line) [0]PETSC ERROR: -ksp_type fgmres (source: command line) [0]PETSC ERROR: -mpi_ksp_max_it 200 (source: file) [0]PETSC ERROR: -mpi_ksp_reuse_preconditioner (source: file) [0]PETSC ERROR: -mpi_ksp_rtol 1.e-9 (source: file) [0]PETSC ERROR: -mpi_ksp_type gmres (source: file) [0]PETSC ERROR: -mpi_linear_solver_server (source: file) [0]PETSC ERROR: -mpi_linear_solver_server_view (source: file) [0]PETSC ERROR: -mpi_pc_gamg_sym_graph true (source: file) [0]PETSC ERROR: -mpi_pc_gamg_symmetrize_graph true (source: file) [0]PETSC ERROR: -mpi_pc_type gamg (source: file) [0]PETSC ERROR: -pc_mpi_minimum_count_per_rank 5000 (source: file) [0]PETSC ERROR: -pc_type mg (source: command line) [0]PETSC ERROR: -use_gpu_aware_mpi 0 (source: environment) [0]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_SELF, 77) - process 0 Possible error running Fortran example src/snes/tutorials/ex5f with 1 MPI process See https://petsc.org/release/faq/ hwloc/linux: Ignoring PCI device with non-16bit domain. Pass --enable-32bits-pci-domain to configure to support such devices (warning: it would break the library ABI, don't enable unless really needed). [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Petsc has generated inconsistent data [0]PETSC ERROR: PCMPI object prefix does not have mpi_linear_solver_server_ [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc! [0]PETSC ERROR: Option left: name:-ksp_type value: preonly source: file [0]PETSC ERROR: Option left: name:-mpi_ksp_max_it value: 200 source: file [0]PETSC ERROR: Option left: name:-mpi_ksp_reuse_preconditioner (no value) source: file [0]PETSC ERROR: Option left: name:-mpi_ksp_rtol value: 1.e-9 source: file [0]PETSC ERROR: Option left: name:-mpi_ksp_type value: gmres source: file [0]PETSC ERROR: Option left: name:-mpi_linear_solver_server_view (no value) source: file [0]PETSC ERROR: Option left: name:-mpi_pc_gamg_sym_graph value: true source: file [0]PETSC ERROR: Option left: name:-mpi_pc_gamg_symmetrize_graph value: true source: file [0]PETSC ERROR: Option left: name:-mpi_pc_type value: gamg source: file [0]PETSC ERROR: Option left: name:-pc_mpi_minimum_count_per_rank value: 5000 source: file [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.20.5, Feb 27, 2024 [0]PETSC ERROR: ./ex5f on a arch-darwin-c-opt named rzy-Precision-7920-Tower by rzy Mon Aug 5 23:19:29 2024 [0]PETSC ERROR: Configure options --with-cc=gcc --with-cc=gcc -with-cxx=g++ --with-fc=gfortran --download-mpich --download-fblaslapack [0]PETSC ERROR: #1 PCCreate_MPI() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mpi/pcmpi.c:763 [0]PETSC ERROR: #2 PCSetType() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/interface/pcset.c:75 [0]PETSC ERROR: #3 PCSetFromOptions() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/interface/pcset.c:146 [0]PETSC ERROR: #4 KSPSetFromOptions() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itcl.c:356 [0]PETSC ERROR: #5 PCSetUp_Seq() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mpi/pcmpi.c:573 [0]PETSC ERROR: #6 PCSetUp_MPI() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/impls/mpi/pcmpi.c:646 [0]PETSC ERROR: #7 PCSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/pc/interface/precon.c:1080 [0]PETSC ERROR: #8 KSPSetUp() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:415 [0]PETSC ERROR: #9 KSPSolve_Private() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:832 [0]PETSC ERROR: #10 KSPSolve() at /home/rzy/rzy/softwares/petsc-3.20.5/src/ksp/ksp/interface/itfunc.c:1079 [0]PETSC ERROR: #11 SNESSolve_NEWTONLS() at /home/rzy/rzy/softwares/petsc-3.20.5/src/snes/impls/ls/ls.c:215 [0]PETSC ERROR: #12 SNESSolve() at /home/rzy/rzy/softwares/petsc-3.20.5/src/snes/interface/snes.c:4659 [0]PETSC ERROR: #13 ex5f.F90:195 application called MPI_Abort(MPI_COMM_SELF, 77) - process 0 Completed PETSc check examples Error while running make check make[1]: *** [makefile:132: check] Error 1 make: *** [GNUmakefile:17: check] Error 2